List of biomedical cybernetics software

The following is a list of software packages and applications for biocybernetics research.

• Systems Biology Markup Language (SBML)
• Biological Pathway Exchange (BioPAX)
• CellML
• Minimum Information About a Simulation Experiment (MIASE)
• Minimum information required in the annotation of models (MIRIAM)
• Systems Biology Ontology (SBO)
• Systems Biology Graphical Notation (SBGN)

• CyberUnits, a class library for computer simulations in life sciences^[1]

• SimThyr – Simulation system for thyroid homeostasis

• List of sequence alignment software
• List of open-source healthcare software
• List of open-source bioinformatics software
• List of proprietary bioinformatics software
• List of freeware health software
• List of molecular graphics systems
• List of systems biology modeling software
• Comparison of software for molecular mechanics modeling
• BioLinux

• PhysioToolkit Software Index: PhysioNet's software collection