RNF125

Protein-coding gene in the species Homo sapiens
RNF125
Identifiers
AliasesRNF125, TRAC-1, TRAC1, TNORS, ring finger protein 125, E3 ubiquitin protein ligase, ring finger protein 125
External IDsOMIM: 610432; MGI: 1914914; HomoloGene: 32369; GeneCards: RNF125; OMA:RNF125 - orthologs
Gene location (Human)
Chromosome 18 (human)
Chr.Chromosome 18 (human)[1]
Chromosome 18 (human)
Genomic location for RNF125
Genomic location for RNF125
Band18q12.1Start32,018,825 bp[1]
End32,073,219 bp[1]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • jejunal mucosa

  • oocyte

  • secondary oocyte

  • parietal pleura

  • mucosa of sigmoid colon

  • superficial temporal artery

  • visceral pleura

  • white blood cell

  • monocyte

  • inferior ganglion of vagus nerve
    n/a
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • metal ion binding
  • p53 binding
  • protein binding
  • transferase activity
  • zinc ion binding
  • ubiquitin conjugating enzyme binding
  • ubiquitin protein ligase activity
Cellular component
  • intracellular membrane-bounded organelle
  • membrane
  • Golgi membrane
  • Golgi apparatus
  • VCP-NPL4-UFD1 AAA ATPase complex
Biological process
  • adaptive immune response
  • positive regulation of proteasomal ubiquitin-dependent protein catabolic process
  • protein ubiquitination
  • immune system process
  • ubiquitin-dependent protein catabolic process
  • negative regulation of type I interferon production
  • negative regulation of RIG-I signaling pathway
  • protein polyubiquitination
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

54941

67664

Ensembl

ENSG00000101695

ENSMUSG00000033107

UniProt

Q96EQ8

Q9D9R0

RefSeq (mRNA)

NM_017831

NM_026301
NM_001364973

RefSeq (protein)

NP_060301

NP_080577
NP_001351902

Location (UCSC)Chr 18: 32.02 – 32.07 Mbn/a
PubMed search[2][3]
Wikidata
View/Edit HumanView/Edit Mouse

E3 ubiquitin-protein ligase RNF125 is an enzyme that in humans is encoded by the RNF125 gene.[4]

This gene encodes a novel E3 ubiquitin ligase that contains an N-terminal RING finger domain. The encoded protein may function as a positive regulator in the T-cell receptor signaling pathway.[4]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000101695 – Ensembl, May 2017
  2. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  3. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ a b "Entrez Gene: RNF125 ring finger protein 125".

Further reading

  • Giannini AL, Gao Y, Bijlmakers MJ (2008). "T-cell regulator RNF125/TRAC-1 belongs to a novel family of ubiquitin ligases with zinc fingers and a ubiquitin-binding domain". Biochem. J. 410 (1): 101–11. doi:10.1042/BJ20070995. PMC 2733222. PMID 17990982.
  • Shoji-Kawata S, Zhong Q, Kameoka M, et al. (2007). "The RING finger ubiquitin ligase RNF125/TRAC-1 down-modulates HIV-1 replication in primary human peripheral blood mononuclear cells". Virology. 368 (1): 191–204. doi:10.1016/j.virol.2007.06.028. PMID 17643463.
  • Zhao H, Li CC, Pardo J, et al. (2005). "A novel E3 ubiquitin ligase TRAC-1 positively regulates T cell activation". J. Immunol. 174 (9): 5288–97. doi:10.4049/jimmunol.174.9.5288. PMID 15843525.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Chu P, Pardo J, Zhao H, et al. (2004). "Systematic identification of regulatory proteins critical for T-cell activation". J. Biol. 2 (3): 21. doi:10.1186/1475-4924-2-21. PMC 333404. PMID 12974981.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
  • Saurin AJ, Borden KL, Boddy MN, Freemont PS (1996). "Does this have a familiar RING?". Trends Biochem. Sci. 21 (6): 208–14. doi:10.1016/s0968-0004(96)80017-x. PMID 8744354.
  • Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.


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